Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LIHC | rs11066082 | chr12:112351348 | T/C | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs11066089 | chr12:112363267 | C/A | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs11066095 | chr12:112377537 | C/T | 6.38E-6 | 191 | 12.57 | 14.98 | 5.17 | KM Plot |
| LIHC | rs11066098 | chr12:112388128 | A/T | 8.15E-6 | 191 | 12.1 | 14.9 | 5.17 | KM Plot |
| LIHC | rs11066111 | chr12:112415179 | A/T | 6.63E-6 | 191 | 12.57 | 14.85 | 5.17 | KM Plot |
| LIHC | rs11066112 | chr12:112416586 | C/T | 6.63E-6 | 191 | 12.57 | 14.85 | 5.17 | KM Plot |
| LIHC | rs11076653 | chr16:90074001 | C/T | 0.000112 | 191 | 13.87 | 12.5 | 4.8 | KM Plot |
| LIHC | rs11076654 | chr16:90074085 | A/T | 0.000103 | 192 | 13.87 | 12.13 | 4.8 | KM Plot |
| LIHC | rs1110291 | chr4:44727118 | T/C | 8.62E-6 | 191 | 3.03 | 13.55 | 16.07 | KM Plot |
| LIHC | rs1110292 | chr4:44727228 | C/T | 8.21E-5 | 190 | 3.4 | 13.53 | 16.07 | KM Plot |
| LIHC | rs1110293 | chr4:44727408 | G/A | 8.62E-6 | 191 | 3.03 | 13.55 | 16.07 | KM Plot |
| LIHC | rs11105267 | chr12:89766807 | G/T | 9.46E-5 | 190 | 13.17 | 13.48 | 2.23 | KM Plot |
| LIHC | rs111301615 | chr17:78375506 | A/G | 9.0E-6 | 189 | 13.85 | 4.2 | 3.37 | KM Plot |
| LIHC | rs111302963 | chr2:202215296 | C/T | 0 | 190 | 13.53 | 12.73 | 0.37 | KM Plot |
| LIHC | rs111309764 | chr7:154853457 | C/T | 0.000419 | 192 | 14.07 | 3.87 | 14.95 | KM Plot |